Biological
and Chemical Resources
- Bioinformatics Sites:
- BioNet Web Server - Access to all Bionet newsgroups
- CDC and ATSDR Home Page - Center for Disease Control
- Chemical Safety / MSDS Information:
- Chemistry and Computational Chemistry Resources:
- Codon Usage Resources:
- Computational Servers: (Structural analyses, prediction) (See also, Blast, Multiple Alignment)
- Amino Acid Analysis Server at EMBL - Sequence searches from amino acid composition
- BCM Secondary Structure Prediction - For protein sequences
![[New!]](http://psyche.uthct.edu/ous/gif/newdiag.gif)
- BLAST Sequence Searches:
- BLOCKS Sequence Searching - From Hutchinson Cancer Research Center (FHCRC); GCG Manual
- Dali Serve at EMBL - Submit 3D coordinates; compares against whole PDB
- Dialign - Multiple protein sequence alignment
- DSC Protein Secondary Structure Prediction - Sequence/alignments submittable (Sternberg Lab)
- EMBL Predict-Protein Server - Secondary structure prediction
- ExPASy at the Univ. of Geneva - Predict 3D structure, "Swiss Model"
- GOR Search - Protein secondary structure by method of Garnier et al.
- ISREC Protein Analysis Server - Structural properties, transmembrane calc., alignment enhancement, etc.!
- LogKow - Calculate log(P) (octanol:water) for 1000's of compounds
- MultAlin Sequence Alignment - Alternate site at Toulouse; enhanced capabilities
- Neural Networks at Your Fingertips - Investigate 8 different models
- nnPredict Server - Predict protein secondary structure
- Oglyc-Base, Signalp, AraClean, DOGS - Databases and computational services
- On-Line Calculator - Evaluates any numerical or algebraic expression
- PatScan - Pattern searches in protein/DNA sequences
- PIMA, Threading, and Folding Class Prediction - From BMERC
- ProClass Protein Classification Server - From the UTHCT
- Protein Colourer - Color-code a protein sequence
- The Protein Machine - Translate nucleotide sequences
- Protein Sequence Analysis - Predict structural class from sequence (from BMERC)
- Protein Superfamily Server - In Germany
- PROWL - Protein, amino acid data and computations; MS orientation
- PSORT - Prediction of protein sorting and localization signals from sequence
- QL (Quadratic Logistic) Protein Secondary Structure Prediction
- Rotor Calculations - Compute xg for Beckman rotors at various RPM
- SignalP - Predict Signal Peptides
- Smith-Waterman Protein Sequence Search Server - Homology searches
- tacg Submission Form - DNA Strider-like restriction analysis of a DNA sequence
- TF Search - Search for Transcription Factor binding sequences
- Tm Calculator - Calculate oligonucleotide Tm values
- TM Predict - Predict transmembrane protein structure
- Virtual Genome Center - Primer selection, Translation, Dot plots, etc.!!!
- WebCutter - Restriction mapping of a nucleotide sequence
- Web Gene - ORF and Restriction Enzyme analyses of nucleotide sequences
- ZPred - Predict protein structure from multiple sequence anignment
- Crystallography, NMR, CD, Mass Spectroscopy, and Scanning Probe Microscopy Resources:
- Cytochrome P450 Resources:
- Didactic Resources:
- Environmental Network Library
- European Molecular Biology Laboratory (EMBL)
- ExPASy at the Univ. of Geneva - Molecular Biology Server; predict 3D structure
- Genbank:
- Genome, Transgene, and Metabolic Databases:
- Journals and Journal Information:
- Metalists, Eclectic Resources:
- Microgravity Research :
- Multiple Sequence Alignment and Analysis:
- NIH Home Page and Other Resources at the National Institutes of Health:
- Professional Societies, Organizations, and Conferences:
- Protein Databases/Information: (for specific proteins or protein families)
- Protein Data Bank (PDB) - Protein, nucleic acid, polysaccharide 3D structures
- Protein Information Resource (PIR) - Protein sequence (primary structure) database
- QUEST Protein Database Center - 2D gel database
- Reference Information Sources:
- RNA Resources: (see also RNA Society and RNA Journal)
- Science and Technology Policy Home Page - Sponsored by AAAS
- SCOP: Structural Classification of Proteins - Secondary structure classes
- Small BioMolecule Resources:
- Veterinary Medical Resources:
- The Virtual Library: (Lists of Internet Biological Resources)
- Virus 3D Structures
to the UTHCT Other Useful Internet Sites Server
Suggestions for additions or changes can be sent to
Dr. Shaun D. Black
Last update April 29, 1998
Shaun D. Black, University of Texas Health Center at Tyler
accesses since March 11, 1996.